##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane3_Index15_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	23907063	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.953419874285686	33.0	31.0	34.0	30.0	34.0
2	32.08461796415561	33.0	31.0	34.0	30.0	34.0
3	32.15386013748322	34.0	31.0	34.0	30.0	34.0
4	35.67051778798592	37.0	35.0	37.0	33.0	37.0
5	35.63235655504819	37.0	35.0	37.0	33.0	37.0
6	35.608446968161665	37.0	35.0	37.0	33.0	37.0
7	35.624599851516685	37.0	35.0	37.0	33.0	37.0
8	35.61288841711757	37.0	35.0	37.0	33.0	37.0
9	37.28206174886476	39.0	37.0	39.0	34.0	39.0
10-14	37.46353918923458	39.2	37.2	39.4	33.2	39.4
15-19	38.390825640104765	40.0	38.0	41.0	33.2	41.0
20-24	38.19634373323064	40.0	38.0	41.0	33.0	41.0
25-29	37.87747735470476	40.0	37.4	41.0	32.6	41.0
30-34	37.677009576625956	40.0	37.0	41.0	32.0	41.0
35-39	37.663746818251994	40.0	37.0	41.0	31.8	41.0
40-44	37.352235563189005	39.6	36.4	41.0	31.0	41.0
45-49	36.903949489738665	39.0	35.2	40.8	30.4	41.0
50-54	36.57908661553282	38.8	35.0	40.4	30.0	41.0
55-59	36.28855125366089	38.2	35.0	40.2	30.0	41.0
60-64	35.48041226979659	37.0	34.0	40.0	28.6	41.0
65-69	34.59931841063037	35.6	33.6	39.0	27.8	41.0
70-74	33.67648470244965	35.0	33.0	37.8	26.4	39.8
75-79	32.70410579501129	35.0	32.2	36.4	25.6	39.0
80-84	31.729442424608994	34.8	31.6	35.2	24.4	37.0
85-89	30.613282208692887	34.0	31.0	35.0	18.8	36.0
90	29.668048183082966	34.0	31.0	35.0	2.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	2.0
10	256.0
11	2805.0
12	8720.0
13	17125.0
14	27157.0
15	36743.0
16	45538.0
17	53825.0
18	61797.0
19	70962.0
20	82554.0
21	96548.0
22	112732.0
23	132291.0
24	158111.0
25	188449.0
26	226793.0
27	273769.0
28	332200.0
29	404646.0
30	495932.0
31	613333.0
32	773625.0
33	1006603.0
34	1368662.0
35	1982785.0
36	3067495.0
37	4468725.0
38	5009134.0
39	2729897.0
40	57849.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	26.634149916282063	12.2962532034989	10.036523516083928	51.033073364135106
2	22.209264895388888	18.83039778556463	35.275081975648156	23.685255343398328
3	25.64036198256558	21.021741074524165	22.67461696667629	30.663279976233966
4	27.665940458398797	27.453275442561804	19.174425863253035	25.706358235786368
5	29.33113428485199	29.84250009917814	21.362476584335145	19.46388903163473
6	24.29118081228973	32.75130090113486	21.57131521782418	21.386203068751232
7	21.445330147418694	18.984059647377048	37.303540156317375	22.267070048886882
8	21.500713218542895	22.21545031578819	29.07001639955031	27.21382006611861
9	21.556314133660425	20.98945541295509	31.46951270246022	25.984717750924265
10-14	24.51847168843367	26.25268083960905	24.701815904913747	24.52703156704353
15-19	24.878966842818336	25.13077678481907	25.131620128169445	24.858636244193146
20-24	24.64764016793443	25.368759985810268	25.464457600024016	24.519142246231286
25-29	24.525467539180028	25.426008679733176	25.37237316929395	24.676150611792853
30-34	24.53682325332372	25.356313553584485	25.349070534108304	24.757792658983483
35-39	24.54771765222467	25.50363176449912	25.309543660959203	24.639106922317012
40-44	24.51682124261401	25.344744525849716	25.444296168248528	24.694138063287745
45-49	24.471035040808108	25.399058608751286	25.37636224606217	24.753544104378438
50-54	24.46727604348013	25.49622643372011	25.41620327046315	24.620294252336613
55-59	24.505342197932123	25.433640909292794	25.363866205273304	24.697150687501775
60-64	24.414053109733306	25.455717972527616	25.46734557687696	24.66288334086212
65-69	24.419976744027476	25.571939260054805	25.451811708194562	24.556272287723157
70-74	24.49493234256876	25.51102214686069	25.359561018056315	24.63448449251424
75-79	24.487966390187616	25.461220046068235	25.425676695491234	24.625136868252916
80-84	24.428321629398837	25.589289800868237	25.437471684113778	24.544916885619152
85-89	24.53512296744884	25.56202745389633	25.33990182367556	24.562947754979273
90	24.265596485540847	25.65226869437827	25.530234679221557	24.551900140859324
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.66722328041718
2	45.89452023878721
3	56.303641958799545
4	53.37229869418516
5	48.79502331648672
6	45.67738388104096
7	43.71240019630558
8	48.714533284661506
9	47.54103188458469
10-14	49.0455032554772
15-19	49.737603087011486
20-24	49.166782414165716
25-29	49.20161815097288
30-34	49.29461591230721
35-39	49.18682457454168
40-44	49.21095930590176
45-49	49.224579145186546
50-54	49.08757029581675
55-59	49.2024928854339
60-64	49.076936450595426
65-69	48.976249031750626
70-74	49.12941683508299
75-79	49.11310325844053
80-84	48.97323851501799
85-89	49.09807072242811
90	48.81749662640017
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	77.0
1	41.0
2	5.0
3	4.5
4	5.5
5	9.0
6	14.0
7	25.5
8	33.5
9	53.0
10	73.0
11	97.5
12	160.5
13	262.0
14	420.5
15	655.5
16	1157.0
17	2085.0
18	3555.5
19	6273.5
20	8087.0
21	10879.5
22	18336.5
23	29813.0
24	45748.5
25	67563.0
26	96117.0
27	132446.0
28	172594.0
29	215328.5
30	238381.0
31	261755.5
32	310235.5
33	364123.5
34	422102.5
35	478557.0
36	537030.5
37	601815.0
38	657801.5
39	705157.5
40	730096.0
41	745583.5
42	776752.5
43	806365.0
44	824513.0
45	831345.5
46	831818.0
47	826119.5
48	823989.5
49	823989.5
50	822564.0
51	814266.0
52	804498.5
53	790445.5
54	780815.0
55	779721.0
56	767417.0
57	750564.0
58	725749.5
59	693836.5
60	678142.0
61	658463.5
62	618908.0
63	570426.5
64	511884.0
65	453535.0
66	392841.5
67	330888.0
68	275060.5
69	221540.5
70	194177.0
71	170951.0
72	127683.0
73	91681.5
74	61820.0
75	38090.5
76	22021.5
77	11693.5
78	5468.5
79	2342.0
80	1354.0
81	957.0
82	382.0
83	152.0
84	67.0
85	34.5
86	32.0
87	20.0
88	9.5
89	5.0
90	2.0
91	4.5
92	4.0
93	2.0
94	2.5
95	1.0
96	0.5
97	0.5
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.008775649271514448
3	0.045066179814726715
4	0.04515820282901333
5	0.044618613336150914
6	0.008763100678657182
7	0.014698585100143838
8	0.011498693921541094
9	0.007579350085788456
10-14	0.010534125417245941
15-19	0.009238274061518975
20-24	0.012627230705837853
25-29	0.005266226135765819
30-34	0.011159045341537771
35-39	0.006821415077209609
40-44	0.0019910434000194837
45-49	6.215736328632254E-4
50-54	9.829731071524764E-4
55-59	0.0016932234628737124
60-64	6.726045771494391E-4
65-69	0.007554252900073924
70-74	0.0030585103657442153
75-79	0.00436858346004275
80-84	0.0017986316428747439
85-89	0.0013452091542988781
90	0.01284975908584003
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.3907063E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	55.506346804429754
#Duplication Level	Relative count
1	100.0
2	32.11303302392583
3	17.47267863138627
4	10.67510045815417
5	7.442026709413281
6	5.441528480292872
7	4.257692765929793
8	3.3576310288431337
9	2.8908120051555883
10++	32.970853596456074
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4992225	2.5791826	5.1180005	1
GAAGA	5076385	2.563604	5.057083	2
CCTGG	4979335	2.5593822	6.180095	1
CTTCT	5262025	2.5306716	5.4682426	1
CTGGA	4781340	2.4297843	8.661317	1
TCCAG	4714175	2.35588	5.6892986	2
CTCCT	4723930	2.309703	7.524666	1
CTGGG	4375600	2.2870317	8.40547	1
CAGGA	4373910	2.2341485	5.49025	1
CTTCA	4562980	2.2057462	5.6605864	1
CCCAG	4305775	2.1876035	7.350018	1
CTCCA	4436220	2.1801674	8.030906	1
CAGAA	4251310	2.111293	5.008347	1
CTCTG	4103455	2.0402014	6.335354	1
CTGGC	3654075	1.8781978	5.329537	1
TGGAA	3711565	1.8647876	5.1671953	2
CTGAA	3750375	1.853004	5.3340764	1
CTCAG	3494220	1.746215	6.067791	1
CTGGT	3267770	1.6521349	5.030016	1
CTTGG	3241245	1.6387242	5.3053412	1
>>END_MODULE
